Resources for Core Promoter Investigation

Elements Navigation Tool

ElemeNT is an interactive tool for rapid and convenient detection of core promoter elements within a given sequence.

The input sequence (plain text or FASTA format) is searched against the known core promoter elements to generate the probability score for each element. 

Only the elements with scores above the specified cutoffs are displayed in the output table.

A Drosophila melanogaster Database

The CORE database utilizes the ElemeNT algorithm to annotate putative core promoter elements among CAGE and RNAseq-defined Drosophila melanogaster TSSs, organized into an Excel file. The goal of the database is to present a comprehensive annotation of the Drosophila melanogaster transcriptome with core promoter elements. 

This paper describes the ElemeNT and CORE resources in details

Visual annotation of CORE results for EPDnew promoters of multiple species

Customized UCSC genome browser sessions providing visual annotation of CORE results based on the Eukaryotic Promoter Database (EPDnew) for multiple organisms.